http://www.whatifsports.com/hd/PlayerProfile/Ratings.aspx?tid=0&pid=2882687. Player A is shooting 28.6%, but in my mind has better attributes than
http://www.whatifsports.com/hd/PlayerProfile/Ratings.aspx?tid=0&pid=2882688 Player B who is shooting 41.2%.

First blush, you don't have much of a sample size. Only nine games.

First off, player A has 35 total shots. Player B has 24 total shots. As arssangunius mentions, too small of a sample size to make any judgement.

Second, player A has taken 16 of his 35 shots from three and has only made 4 of those. Considering he isn't a strong perimeter player at D-2, that's leading to the lower field goal percentage. Player B has only taken 4 three pointers.

Lastly, player B does have a little bit of a speed advantage, which helps.

I think player B is using solid BH and SPD to get to the rack while player A is using average to below average PE to take threes. Just think player B is utilizing his skill set a little better.

Ok. So I've lowered player A to -2 on 3 pointers. He was at -1. We'll see if that helps