It looks to me like your two guys will clear at the exact moment of the freeze, which means you'll get the slots to draft in Rule 5 but not to assign your guy. Iirc, trades completed <24 hours prior to Rule 5 are exempted, which means your acquisition can be taken in rule 5, so you'll have to find another way to put your guy on the 40.
The better play (20/20 hindsight) was to DFA the two players instead of waiving them. I found out recently that you can DFA minor leaguers that are on the 40 just like major leaguers.
You might be able to release one of the waived guys; I've never tried to release a guy that I've waived but that hasn't cleared waivers yet. Don't know how that would go.